Time

Subject

Saturday-September 19^th

09:00-10:30

Welcome and registration confirmation

Saturday-September 19^th

10:30-12:00

Dr. Yazdan Asgari: Introduction to MATLAB programming (practical)

Saturday-September 19^th

12:00-13:45

Lunch time

Saturday-September 19^th

13:45-15:15

Dr. Pegah Khosravi: Introduction to expression data and network analysis (practical)

Saturday-September 19^th

15:15-15:45

Coffee break

Saturday-September 19^th

15:45-17:45

Dr. Elnaz Saberi, Dr. Pegah Khosravi, and Dr. Yazdan Asgari: Cytoscape (practical)

Time

Subject

Sunday-September 20^th

09:00-10:15

Dr. Esmaeil Ebrahimie:  Understanding of systems biology (theory)

Sunday-September 20^th

10:15-10:45

Coffee break

Sunday-September 20^th

10:45-12:00

Dr. Esmaeil Ebrahimie:  RNA-Seq analysis in Prokaryotes and Eukaryotes (practical)

Sunday-September 20^th

12:00-14:00

Lunch time

Sunday-September 20^th

14:00-15:15

Dr. Esmaeil Ebrahimie:  Small RNA-Seq analysis (practical)

Sunday-September 20^th

15:15-15:45

Coffee break

Sunday-September 20^th

15:45-17:00

Dr. Esmaeil Ebrahimie:  Pathway analysis by Gene Set Enrichment approach and Gene Ontology network analysis (practical)

Time

Subject

Monday-September 21^st

09:00-10:15

Dr. Esmaeil Ebrahimie:  Data mining in functional genomics: application of Knowledge discovery, Biosignature, modelling and prediction (theory)

Monday-September 21^st

10:15-10:45

Coffee break

Monday-September 21^st

10:45-12:00

Dr. Esmaeil Ebrahimie:  How to prepare different datasets of protein, SNP, Prosite, neucleotide and transcription factor (practical)

Monday-September 21^st

12:00-14:00

Lunch time

Monday-September 21^st

14:00-15:15

Dr. Esmaeil Ebrahimie:  Attribute weighting models and combination with multivariate analysis (practical)

Monday-September 21^st

15:15-15:45

Coffee break

Monday-September 21^st

15:45-17:00

Dr. Esmaeil Ebrahimie:  Predictive models (Decision trees and association rule mining) (practical)

Time

Subject

Tuesday-September 22^nd

09:00-10:15

Dr. Esmaeil Ebrahimie:  Comparative Genomics – A brief Introduction (theory)

Tuesday-September 22^nd

10:15-10:45

Coffee break

Tuesday-September 22^nd

10:45-12:00

Dr. Esmaeil Ebrahimie:  Genome wide association analysis (GWAS) and SNP discovery (practical)

Tuesday-September 22^nd

12:00-14:00

Lunch time

Tuesday-September 22^nd

14:00-15:15

Dr. Esmaeil Ebrahimie:  Variant selection based on amino acids changes, GO analysis, and transcriptomics changes (practical)

Tuesday-September 22^nd

15:15-15:45

End of the summer school and certificate part